J7_8BIM_002

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8BIM|1|0|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BIM|1|0|C|817
8BIM|1|0|G|818
8BIM|1|0|A|819
8BIM|1|0|A|820
8BIM|1|0|A|821
8BIM|1|0|G|822
*
8BIM|1|0|C|835
8BIM|1|0|G|836
8BIM|1|0|C|837
8BIM|1|0|C|838
*
8BIM|1|0|G|940
8BIM|1|0|A|941
8BIM|1|0|G|942
8BIM|1|0|A|943
8BIM|1|0|C|944
8BIM|1|0|A|945
8BIM|1|0|C|946
*
8BIM|1|0|G|971
8BIM|1|0|A|972
8BIM|1|0|A|973
8BIM|1|0|G|974
8BIM|1|0|A|975
8BIM|1|0|G|976
*
8BIM|1|0|C|987
8BIM|1|0|A|988
8BIM|1|0|G|989
8BIM|1|0|A|990
8BIM|1|0|C|991
*
8BIM|1|0|G|1163
8BIM|1|0|C|1164
*
8BIM|1|0|G|1185
8BIM|1|0|G|1186
8BIM|1|0|G|1187
8BIM|1|0|U|1188
8BIM|1|0|A|1189
8BIM|1|0|G|1190

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 1

5S ribosomal RNA; 5S rRNA

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain W

50S ribosomal protein L30

Chain d

50S ribosomal protein L35