J7_8BPO_001
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8BPO|1|A1|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|C|1666
8BPO|1|A1|A|1667
8BPO|1|A1|A|1668
8BPO|1|A1|A|1669
8BPO|1|A1|G|1670
8BPO|1|A1|U|1671
*
8BPO|1|A1|A|1684
8BPO|1|A1|G|1685
*
8BPO|1|A1|U|1852
8BPO|1|A1|G|1853
8BPO|1|A1|G|1854
8BPO|1|A1|G|1855
*
8BPO|1|A1|C|1879
8BPO|1|A1|G|1880
8BPO|1|A1|C|1881
8BPO|1|A1|U|1882
8BPO|1|A1|G|1883
8BPO|1|A1|C|1884
*
8BPO|1|A1|G|1895
8BPO|1|A1|A|1896
8BPO|1|A1|A|1897
8BPO|1|A1|C|1898
8BPO|1|A1|G|1899
*
8BPO|1|A1|C|2077
8BPO|1|A1|C|2078
*
8BPO|1|A1|G|2278
8BPO|1|A1|A|2279
8BPO|1|A1|G|2280
8BPO|1|A1|U|2281
8BPO|1|A1|A|2282
8BPO|1|A1|G|2283
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain B1
- 5S ribosomal RNA; 5S rRNA
- Chain C2
- 60S ribosomal protein L4
- Chain F2
- 60S ribosomal protein L7
- Chain K2
- 60S ribosomal protein L13
- Chain P2
- Ribosomal protein L18
- Chain S2
- 60S ribosomal protein L21
- Chain Z2
- 60S ribosomal protein L27a
- Chain a2
- 60S ribosomal protein L29
- Chain d2
- Ribosomal protein L32
- Chain e2
- 60S ribosomal protein L35a
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