J7_8C8Y_001

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8C8Y|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8Y|1|A|C|8
8C8Y|1|A|G|9
8C8Y|1|A|A|10
8C8Y|1|A|C|11
8C8Y|1|A|U|12
8C8Y|1|A|A|13
8C8Y|1|A|A|14
8C8Y|1|A|G|15
*
8C8Y|1|A|U|525
8C8Y|1|A|A|526
8C8Y|1|A|C|527
8C8Y|1|A|A|528
8C8Y|1|A|A|529
8C8Y|1|A|G|530
8C8Y|1|A|C|531
*
8C8Y|1|A|G|2018
8C8Y|1|A|A|2019
8C8Y|1|A|A|2020
8C8Y|1|A|C|2021
8C8Y|1|A|U|2022
8C8Y|1|A|C|2023
*
8C8Y|1|A|G|2040
8C8Y|1|A|U|2041
8C8Y|1|A|A|2042
8C8Y|1|A|C|2043
*
8C8Y|1|A|G|2625
8C8Y|1|A|C|2626
8C8Y|1|A|G|2627
8C8Y|1|A|C|2628
8C8Y|1|A|U|2629
8C8Y|1|A|G|2630
*
8C8Y|1|A|C|2788
8C8Y|1|A|C|2789
*
8C8Y|1|A|G|2894
8C8Y|1|A|G|2895

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22