3D structure

PDB id
8C8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.03 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8C8Y|1|A|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8C8Y|1|A|C|817
8C8Y|1|A|G|818
8C8Y|1|A|A|819
8C8Y|1|A|A|820
8C8Y|1|A|A|821
8C8Y|1|A|G|822
*
8C8Y|1|A|C|835
8C8Y|1|A|G|836
8C8Y|1|A|C|837
8C8Y|1|A|C|838
*
8C8Y|1|A|G|940
8C8Y|1|A|A|941
8C8Y|1|A|G|942
8C8Y|1|A|A|943
8C8Y|1|A|C|944
8C8Y|1|A|A|945
8C8Y|1|A|C|946
*
8C8Y|1|A|G|971
8C8Y|1|A|A|972
8C8Y|1|A|A|973
8C8Y|1|A|G|974
8C8Y|1|A|A|975
8C8Y|1|A|G|976
*
8C8Y|1|A|C|987
8C8Y|1|A|A|988
8C8Y|1|A|G|989
8C8Y|1|A|A|990
8C8Y|1|A|C|991
*
8C8Y|1|A|G|1163
8C8Y|1|A|C|1164
*
8C8Y|1|A|G|1185
8C8Y|1|A|G|1186
8C8Y|1|A|G|1187
8C8Y|1|A|U|1188
8C8Y|1|A|A|1189
8C8Y|1|A|G|1190

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30

Coloring options:

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