J7_8CDR_001
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8CDR|1|AA|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CDR|1|AA|C|949
8CDR|1|AA|G|950
8CDR|1|AA|A|951
8CDR|1|AA|A|952
8CDR|1|AA|G|953
8CDR|1|AA|U|954
*
8CDR|1|AA|A|967
8CDR|1|AA|G|968
*
8CDR|1|AA|U|1114
8CDR|1|AA|G|1115
8CDR|1|AA|G|1116
8CDR|1|AA|G|1117
*
8CDR|1|AA|C|1141
8CDR|1|AA|G|1142
8CDR|1|AA|A|1143
8CDR|1|AA|U|1144
8CDR|1|AA|G|1145
8CDR|1|AA|C|1146
*
8CDR|1|AA|G|1157
8CDR|1|AA|A|1158
8CDR|1|AA|A|1159
8CDR|1|AA|C|1160
8CDR|1|AA|G|1161
*
8CDR|1|AA|C|1338
8CDR|1|AA|C|1339
*
8CDR|1|AA|G|1365
8CDR|1|AA|A|1366
8CDR|1|AA|G|1367
8CDR|1|AA|U|1368
8CDR|1|AA|A|1369
8CDR|1|AA|G|1370
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain C
- 60S ribosomal protein L18-A
- Chain F
- 60S ribosomal protein L21-A
- Chain GG
- 60S ribosomal protein L4-A
- Chain JJ
- 60S ribosomal protein L7-A
- Chain M
- 60S ribosomal protein L28
- Chain N
- 60S ribosomal protein L29
- Chain OO
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L32
- Chain R
- 60S ribosomal protein L33-A
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