J7_8CGD_002
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 8CGD|1|a|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CGD|1|a|C|817
8CGD|1|a|G|818
8CGD|1|a|A|819
8CGD|1|a|A|820
8CGD|1|a|A|821
8CGD|1|a|G|822
*
8CGD|1|a|C|835
8CGD|1|a|G|836
8CGD|1|a|C|837
8CGD|1|a|C|838
*
8CGD|1|a|G|940
8CGD|1|a|A|941
8CGD|1|a|G|942
8CGD|1|a|A|943
8CGD|1|a|C|944
8CGD|1|a|A|945
8CGD|1|a|C|946
*
8CGD|1|a|G|971
8CGD|1|a|A|972
8CGD|1|a|A|973
8CGD|1|a|G|974
8CGD|1|a|A|975
8CGD|1|a|G|976
*
8CGD|1|a|C|987
8CGD|1|a|A|988
8CGD|1|a|G|989
8CGD|1|a|A|990
8CGD|1|a|C|991
*
8CGD|1|a|G|1163
8CGD|1|a|C|1164
*
8CGD|1|a|G|1185
8CGD|1|a|G|1186
8CGD|1|a|G|1187
8CGD|1|a|U|1188
8CGD|1|a|A|1189
8CGD|1|a|G|1190
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain k
- 50S ribosomal protein L15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
- Chain y
- Large ribosomal subunit protein uL30
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