3D structure

PDB id
8CGK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Lincomycin and Avilamycin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.64 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
8CGK|1|a|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CGK|1|a|C|8
8CGK|1|a|G|9
8CGK|1|a|A|10
8CGK|1|a|C|11
8CGK|1|a|U|12
8CGK|1|a|A|13
8CGK|1|a|A|14
8CGK|1|a|G|15
*
8CGK|1|a|U|525
8CGK|1|a|A|526
8CGK|1|a|C|527
8CGK|1|a|A|528
8CGK|1|a|A|529
8CGK|1|a|G|530
8CGK|1|a|C|531
*
8CGK|1|a|G|2018
8CGK|1|a|A|2019
8CGK|1|a|A|2020
8CGK|1|a|C|2021
8CGK|1|a|U|2022
8CGK|1|a|C|2023
*
8CGK|1|a|G|2040
8CGK|1|a|U|2041
8CGK|1|a|A|2042
8CGK|1|a|C|2043
*
8CGK|1|a|G|2625
8CGK|1|a|C|2626
8CGK|1|a|G|2627
8CGK|1|a|C|2628
8CGK|1|a|U|2629
8CGK|1|a|G|2630
*
8CGK|1|a|C|2788
8CGK|1|a|C|2789
*
8CGK|1|a|G|2894
8CGK|1|a|G|2895

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
Large ribosomal subunit protein uL3
Chain i
Large ribosomal subunit protein uL13
Chain p
Large ribosomal subunit protein bL20
Chain r
Large ribosomal subunit protein uL22
Chain z
Large ribosomal subunit protein bL32

Coloring options:

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