J7_8CGN_001

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8CGN|1|AA|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGN|1|AA|C|949
8CGN|1|AA|G|950
8CGN|1|AA|A|951
8CGN|1|AA|A|952
8CGN|1|AA|G|953
8CGN|1|AA|U|954
*
8CGN|1|AA|A|967
8CGN|1|AA|G|968
*
8CGN|1|AA|U|1114
8CGN|1|AA|G|1115
8CGN|1|AA|G|1116
8CGN|1|AA|G|1117
*
8CGN|1|AA|C|1141
8CGN|1|AA|G|1142
8CGN|1|AA|A|1143
8CGN|1|AA|U|1144
8CGN|1|AA|G|1145
8CGN|1|AA|C|1146
*
8CGN|1|AA|G|1157
8CGN|1|AA|A|1158
8CGN|1|AA|A|1159
8CGN|1|AA|C|1160
8CGN|1|AA|G|1161
*
8CGN|1|AA|C|1338
8CGN|1|AA|C|1339
*
8CGN|1|AA|G|1365
8CGN|1|AA|A|1366
8CGN|1|AA|G|1367
8CGN|1|AA|U|1368
8CGN|1|AA|A|1369
8CGN|1|AA|G|1370

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L18-A

Chain F

60S ribosomal protein L21-A

Chain GG

60S ribosomal protein L4-A

Chain JJ

60S ribosomal protein L7-A

Chain M

60S ribosomal protein L28

Chain N

60S ribosomal protein L29

Chain OO

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L32

Chain R

60S ribosomal protein L33-A