J7_8CVK_001

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

8CVK|1|1A|G|530, 8CVK|1|1A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVK|1|1A|A|8
8CVK|1|1A|U|9
8CVK|1|1A|G|10
8CVK|1|1A|G|11
8CVK|1|1A|U|12
8CVK|1|1A|A|13
8CVK|1|1A|A|14
8CVK|1|1A|G|15
*
8CVK|1|1A|U|525
8CVK|1|1A|A|526
8CVK|1|1A|C|527
8CVK|1|1A|A|528
8CVK|1|1A|A|529
8CVK|1|1A|G|530
8CVK|1|1A|C|531
*
8CVK|1|1A|G|2018
8CVK|1|1A|A|2019
8CVK|1|1A|A|2020
8CVK|1|1A|C|2021
8CVK|1|1A|U|2022
8CVK|1|1A|G|2023
*
8CVK|1|1A|C|2040
8CVK|1|1A|U|2041
8CVK|1|1A|A|2042
8CVK|1|1A|C|2043
*
8CVK|1|1A|G|2625
8CVK|1|1A|C|2626
8CVK|1|1A|G|2627
8CVK|1|1A|C|2628
8CVK|1|1A|A|2629
8CVK|1|1A|G|2630
*
8CVK|1|1A|C|2788
8CVK|1|1A|C|2789
*
8CVK|1|1A|G|2894
8CVK|1|1A|U|2895

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22