J7_8CVK_003

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8CVK|1|2A|A|945, 8CVK|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVK|1|2A|C|817
8CVK|1|2A|G|818
8CVK|1|2A|A|819
8CVK|1|2A|A|820
8CVK|1|2A|A|821
8CVK|1|2A|U|822
*
8CVK|1|2A|A|835
8CVK|1|2A|G|836
*
8CVK|1|2A|U|943
8CVK|1|2A|G|944
8CVK|1|2A|A|945
8CVK|1|2A|G|946
*
8CVK|1|2A|C|971
8CVK|1|2A|G|972
8CVK|1|2A|A|973
8CVK|1|2A|G|974
8CVK|1|2A|C|975
8CVK|1|2A|G|975|||A
8CVK|1|2A|C|976
*
8CVK|1|2A|G|987
8CVK|1|2A|A|988
8CVK|1|2A|G|989
8CVK|1|2A|A|990
8CVK|1|2A|C|991
*
8CVK|1|2A|G|1163
8CVK|1|2A|G|1164
*
8CVK|1|2A|C|1185
8CVK|1|2A|G|1186
8CVK|1|2A|G|1187
8CVK|1|2A|U|1188
8CVK|1|2A|A|1189
8CVK|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21