J7_8E30_002

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8E30|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E30|1|I|C|817
8E30|1|I|G|818
8E30|1|I|A|819
8E30|1|I|A|820
8E30|1|I|A|821
8E30|1|I|G|822
*
8E30|1|I|C|835
8E30|1|I|G|836
8E30|1|I|C|837
8E30|1|I|C|838
*
8E30|1|I|G|940
8E30|1|I|A|941
8E30|1|I|G|942
8E30|1|I|A|943
8E30|1|I|C|944
8E30|1|I|A|945
8E30|1|I|C|946
*
8E30|1|I|G|971
8E30|1|I|A|972
8E30|1|I|A|973
8E30|1|I|G|974
8E30|1|I|A|975
8E30|1|I|G|976
*
8E30|1|I|C|987
8E30|1|I|A|988
8E30|1|I|G|989
8E30|1|I|A|990
8E30|1|I|C|991
*
8E30|1|I|G|1163
8E30|1|I|C|1164
*
8E30|1|I|G|1185
8E30|1|I|G|1186
8E30|1|I|G|1187
8E30|1|I|U|1188
8E30|1|I|A|1189
8E30|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15