J7_8E32_002

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8E32|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E32|1|I|C|817
8E32|1|I|G|818
8E32|1|I|A|819
8E32|1|I|A|820
8E32|1|I|A|821
8E32|1|I|G|822
*
8E32|1|I|C|835
8E32|1|I|G|836
8E32|1|I|C|837
8E32|1|I|C|838
*
8E32|1|I|G|940
8E32|1|I|A|941
8E32|1|I|G|942
8E32|1|I|A|943
8E32|1|I|C|944
8E32|1|I|A|945
8E32|1|I|C|946
*
8E32|1|I|G|971
8E32|1|I|A|972
8E32|1|I|A|973
8E32|1|I|G|974
8E32|1|I|A|975
8E32|1|I|G|976
*
8E32|1|I|C|987
8E32|1|I|A|988
8E32|1|I|G|989
8E32|1|I|A|990
8E32|1|I|C|991
*
8E32|1|I|G|1163
8E32|1|I|C|1164
*
8E32|1|I|G|1185
8E32|1|I|G|1186
8E32|1|I|G|1187
8E32|1|I|U|1188
8E32|1|I|A|1189
8E32|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15