J7_8E33_001

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8E33|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E33|1|I|C|8
8E33|1|I|G|9
8E33|1|I|A|10
8E33|1|I|C|11
8E33|1|I|U|12
8E33|1|I|A|13
8E33|1|I|A|14
8E33|1|I|G|15
*
8E33|1|I|U|525
8E33|1|I|A|526
8E33|1|I|C|527
8E33|1|I|A|528
8E33|1|I|A|529
8E33|1|I|G|530
8E33|1|I|C|531
*
8E33|1|I|G|2018
8E33|1|I|A|2019
8E33|1|I|A|2020
8E33|1|I|C|2021
8E33|1|I|U|2022
8E33|1|I|C|2023
*
8E33|1|I|G|2040
8E33|1|I|U|2041
8E33|1|I|A|2042
8E33|1|I|C|2043
*
8E33|1|I|G|2625
8E33|1|I|C|2626
8E33|1|I|G|2627
8E33|1|I|C|2628
8E33|1|I|U|2629
8E33|1|I|G|2630
*
8E33|1|I|C|2788
8E33|1|I|C|2789
*
8E33|1|I|G|2894
8E33|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L32