J7_8E35_002

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8E35|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E35|1|I|C|817
8E35|1|I|G|818
8E35|1|I|A|819
8E35|1|I|A|820
8E35|1|I|A|821
8E35|1|I|G|822
*
8E35|1|I|C|835
8E35|1|I|G|836
8E35|1|I|C|837
8E35|1|I|C|838
*
8E35|1|I|G|940
8E35|1|I|A|941
8E35|1|I|G|942
8E35|1|I|A|943
8E35|1|I|C|944
8E35|1|I|A|945
8E35|1|I|C|946
*
8E35|1|I|G|971
8E35|1|I|A|972
8E35|1|I|A|973
8E35|1|I|G|974
8E35|1|I|A|975
8E35|1|I|G|976
*
8E35|1|I|C|987
8E35|1|I|A|988
8E35|1|I|G|989
8E35|1|I|A|990
8E35|1|I|C|991
*
8E35|1|I|G|1163
8E35|1|I|C|1164
*
8E35|1|I|G|1185
8E35|1|I|G|1186
8E35|1|I|G|1187
8E35|1|I|U|1188
8E35|1|I|A|1189
8E35|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15