J7_8E3O_002

3D structure

PDB id

8E3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to solithromycin and VM1

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8E3O|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E3O|1|I|C|817
8E3O|1|I|G|818
8E3O|1|I|A|819
8E3O|1|I|A|820
8E3O|1|I|A|821
8E3O|1|I|G|822
*
8E3O|1|I|C|835
8E3O|1|I|G|836
8E3O|1|I|C|837
8E3O|1|I|C|838
*
8E3O|1|I|G|940
8E3O|1|I|A|941
8E3O|1|I|G|942
8E3O|1|I|A|943
8E3O|1|I|C|944
8E3O|1|I|A|945
8E3O|1|I|C|946
*
8E3O|1|I|G|971
8E3O|1|I|A|972
8E3O|1|I|A|973
8E3O|1|I|G|974
8E3O|1|I|A|975
8E3O|1|I|G|976
*
8E3O|1|I|C|987
8E3O|1|I|A|988
8E3O|1|I|G|989
8E3O|1|I|A|990
8E3O|1|I|C|991
*
8E3O|1|I|G|1163
8E3O|1|I|C|1164
*
8E3O|1|I|G|1185
8E3O|1|I|G|1186
8E3O|1|I|G|1187
8E3O|1|I|U|1188
8E3O|1|I|A|1189
8E3O|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15