J7_8E41_002

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8E41|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E41|1|I|C|817
8E41|1|I|G|818
8E41|1|I|A|819
8E41|1|I|A|820
8E41|1|I|A|821
8E41|1|I|G|822
*
8E41|1|I|C|835
8E41|1|I|G|836
8E41|1|I|C|837
8E41|1|I|C|838
*
8E41|1|I|G|940
8E41|1|I|A|941
8E41|1|I|G|942
8E41|1|I|A|943
8E41|1|I|C|944
8E41|1|I|A|945
8E41|1|I|C|946
*
8E41|1|I|G|971
8E41|1|I|A|972
8E41|1|I|A|973
8E41|1|I|G|974
8E41|1|I|A|975
8E41|1|I|G|976
*
8E41|1|I|C|987
8E41|1|I|A|988
8E41|1|I|G|989
8E41|1|I|A|990
8E41|1|I|C|991
*
8E41|1|I|G|1163
8E41|1|I|C|1164
*
8E41|1|I|G|1185
8E41|1|I|G|1186
8E41|1|I|G|1187
8E41|1|I|U|1188
8E41|1|I|A|1189
8E41|1|I|G|1190

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15