J7_8E42_002

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8E42|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E42|1|I|C|817
8E42|1|I|G|818
8E42|1|I|A|819
8E42|1|I|A|820
8E42|1|I|A|821
8E42|1|I|G|822
*
8E42|1|I|C|835
8E42|1|I|G|836
8E42|1|I|C|837
8E42|1|I|C|838
*
8E42|1|I|G|940
8E42|1|I|A|941
8E42|1|I|G|942
8E42|1|I|A|943
8E42|1|I|C|944
8E42|1|I|A|945
8E42|1|I|C|946
*
8E42|1|I|G|971
8E42|1|I|A|972
8E42|1|I|A|973
8E42|1|I|G|974
8E42|1|I|A|975
8E42|1|I|G|976
*
8E42|1|I|C|987
8E42|1|I|A|988
8E42|1|I|G|989
8E42|1|I|A|990
8E42|1|I|C|991
*
8E42|1|I|G|1163
8E42|1|I|C|1164
*
8E42|1|I|G|1185
8E42|1|I|G|1186
8E42|1|I|G|1187
8E42|1|I|U|1188
8E42|1|I|A|1189
8E42|1|I|G|1190

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15