3D structure

PDB id
8E43 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound streptogramin A analog 3336
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
33 nucleotides
Bulged bases
8E43|1|I|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8E43|1|I|C|817
8E43|1|I|G|818
8E43|1|I|A|819
8E43|1|I|A|820
8E43|1|I|A|821
8E43|1|I|G|822
*
8E43|1|I|C|835
8E43|1|I|G|836
8E43|1|I|C|837
*
8E43|1|I|G|942
8E43|1|I|A|943
8E43|1|I|C|944
8E43|1|I|A|945
8E43|1|I|C|946
*
8E43|1|I|G|971
8E43|1|I|A|972
8E43|1|I|A|973
8E43|1|I|G|974
8E43|1|I|A|975
8E43|1|I|G|976
*
8E43|1|I|C|987
8E43|1|I|A|988
8E43|1|I|G|989
8E43|1|I|A|990
8E43|1|I|C|991
*
8E43|1|I|G|1163
8E43|1|I|C|1164
*
8E43|1|I|G|1185
8E43|1|I|G|1186
8E43|1|I|G|1187
8E43|1|I|U|1188
8E43|1|I|A|1189
8E43|1|I|G|1190

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain J
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15

Coloring options:

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