J7_8E46_002

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8E46|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E46|1|I|C|817
8E46|1|I|G|818
8E46|1|I|A|819
8E46|1|I|A|820
8E46|1|I|A|821
8E46|1|I|G|822
*
8E46|1|I|C|835
8E46|1|I|G|836
8E46|1|I|C|837
8E46|1|I|C|838
*
8E46|1|I|G|940
8E46|1|I|A|941
8E46|1|I|G|942
8E46|1|I|A|943
8E46|1|I|C|944
8E46|1|I|A|945
8E46|1|I|C|946
*
8E46|1|I|G|971
8E46|1|I|A|972
8E46|1|I|A|973
8E46|1|I|G|974
8E46|1|I|A|975
8E46|1|I|G|976
*
8E46|1|I|C|987
8E46|1|I|A|988
8E46|1|I|G|989
8E46|1|I|A|990
8E46|1|I|C|991
*
8E46|1|I|G|1163
8E46|1|I|C|1164
*
8E46|1|I|G|1185
8E46|1|I|G|1186
8E46|1|I|G|1187
8E46|1|I|U|1188
8E46|1|I|A|1189
8E46|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15