J7_8E47_003

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8E47|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E47|1|I|C|817
8E47|1|I|G|818
8E47|1|I|A|819
8E47|1|I|A|820
8E47|1|I|A|821
8E47|1|I|G|822
*
8E47|1|I|C|835
8E47|1|I|G|836
8E47|1|I|C|837
8E47|1|I|C|838
*
8E47|1|I|G|940
8E47|1|I|A|941
8E47|1|I|G|942
8E47|1|I|A|943
8E47|1|I|C|944
8E47|1|I|A|945
8E47|1|I|C|946
*
8E47|1|I|G|971
8E47|1|I|A|972
8E47|1|I|A|973
8E47|1|I|G|974
8E47|1|I|A|975
8E47|1|I|G|976
*
8E47|1|I|C|987
8E47|1|I|A|988
8E47|1|I|G|989
8E47|1|I|A|990
8E47|1|I|C|991
*
8E47|1|I|G|1163
8E47|1|I|C|1164
*
8E47|1|I|G|1185
8E47|1|I|G|1186
8E47|1|I|G|1187
8E47|1|I|U|1188
8E47|1|I|A|1189
8E47|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15