J7_8E48_001

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8E48|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E48|1|I|C|8
8E48|1|I|G|9
8E48|1|I|A|10
8E48|1|I|C|11
8E48|1|I|U|12
8E48|1|I|A|13
8E48|1|I|A|14
8E48|1|I|G|15
*
8E48|1|I|U|525
8E48|1|I|A|526
8E48|1|I|C|527
8E48|1|I|A|528
8E48|1|I|A|529
8E48|1|I|G|530
8E48|1|I|C|531
*
8E48|1|I|G|2018
8E48|1|I|A|2019
8E48|1|I|A|2020
8E48|1|I|C|2021
8E48|1|I|U|2022
8E48|1|I|C|2023
*
8E48|1|I|G|2040
8E48|1|I|U|2041
8E48|1|I|A|2042
8E48|1|I|C|2043
*
8E48|1|I|G|2625
8E48|1|I|C|2626
8E48|1|I|G|2627
8E48|1|I|C|2628
8E48|1|I|U|2629
8E48|1|I|G|2630
*
8E48|1|I|C|2788
8E48|1|I|C|2789
*
8E48|1|I|G|2894
8E48|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L32