3D structure

PDB id
8EIU (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with A-loop mutations U2554C and U2555C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8EIU|1|a|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8EIU|1|a|C|817
8EIU|1|a|G|818
8EIU|1|a|A|819
8EIU|1|a|A|820
8EIU|1|a|A|821
8EIU|1|a|G|822
*
8EIU|1|a|C|835
8EIU|1|a|G|836
8EIU|1|a|C|837
8EIU|1|a|C|838
*
8EIU|1|a|G|940
8EIU|1|a|A|941
8EIU|1|a|G|942
8EIU|1|a|A|943
8EIU|1|a|C|944
8EIU|1|a|A|945
8EIU|1|a|C|946
*
8EIU|1|a|G|971
8EIU|1|a|A|972
8EIU|1|a|A|973
8EIU|1|a|G|974
8EIU|1|a|A|975
8EIU|1|a|G|976
*
8EIU|1|a|C|987
8EIU|1|a|A|988
8EIU|1|a|G|989
8EIU|1|a|A|990
8EIU|1|a|C|991
*
8EIU|1|a|G|1163
8EIU|1|a|C|1164
*
8EIU|1|a|G|1185
8EIU|1|a|G|1186
8EIU|1|a|G|1187
8EIU|1|a|U|1188
8EIU|1|a|A|1189
8EIU|1|a|G|1190

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain b
5S ribosomal RNA; 5S rRNA
Chain k
50S ribosomal protein L15
Chain p
50S ribosomal protein L20
Chain q
Ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:

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