J7_8EKB_001
3D structure
- PDB id
- 8EKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
- Length
- 35 nucleotides
- Bulged bases
- 8EKB|1|1A|G|530, 8EKB|1|1A|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EKB|1|1A|A|8
8EKB|1|1A|U|9
8EKB|1|1A|G|10
8EKB|1|1A|G|11
8EKB|1|1A|U|12
8EKB|1|1A|A|13
8EKB|1|1A|A|14
8EKB|1|1A|G|15
*
8EKB|1|1A|U|525
8EKB|1|1A|A|526
8EKB|1|1A|C|527
8EKB|1|1A|A|528
8EKB|1|1A|A|529
8EKB|1|1A|G|530
8EKB|1|1A|C|531
*
8EKB|1|1A|G|2018
8EKB|1|1A|A|2019
8EKB|1|1A|A|2020
8EKB|1|1A|C|2021
8EKB|1|1A|U|2022
8EKB|1|1A|G|2023
*
8EKB|1|1A|C|2040
8EKB|1|1A|U|2041
8EKB|1|1A|A|2042
8EKB|1|1A|C|2043
*
8EKB|1|1A|G|2625
8EKB|1|1A|C|2626
8EKB|1|1A|G|2627
8EKB|1|1A|C|2628
8EKB|1|1A|A|2629
8EKB|1|1A|G|2630
*
8EKB|1|1A|C|2788
8EKB|1|1A|C|2789
*
8EKB|1|1A|G|2894
8EKB|1|1A|U|2895
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
Coloring options: