J7_8EKC_002
3D structure
- PDB id
- 8EKC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 8EKC|1|A|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EKC|1|A|C|817
8EKC|1|A|G|818
8EKC|1|A|A|819
8EKC|1|A|A|820
8EKC|1|A|A|821
8EKC|1|A|G|822
*
8EKC|1|A|C|835
8EKC|1|A|G|836
8EKC|1|A|C|837
8EKC|1|A|C|838
*
8EKC|1|A|G|940
8EKC|1|A|A|941
8EKC|1|A|G|942
8EKC|1|A|A|943
8EKC|1|A|C|944
8EKC|1|A|A|945
8EKC|1|A|C|946
*
8EKC|1|A|G|971
8EKC|1|A|A|972
8EKC|1|A|A|973
8EKC|1|A|G|974
8EKC|1|A|A|975
8EKC|1|A|G|976
*
8EKC|1|A|C|987
8EKC|1|A|A|988
8EKC|1|A|G|989
8EKC|1|A|A|990
8EKC|1|A|C|991
*
8EKC|1|A|G|1163
8EKC|1|A|C|1164
*
8EKC|1|A|G|1185
8EKC|1|A|G|1186
8EKC|1|A|G|1187
8EKC|1|A|U|1188
8EKC|1|A|A|1189
8EKC|1|A|G|1190
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain 7
- 50S ribosomal protein L35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain N
- 50S Ribosomal Protein L15
- Chain S
- 50S ribosomal protein L20
- Chain T
- Ribosomal protein L21
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