J7_8EV6_001
3D structure
- PDB id
- 8EV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.946 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
- Length
- 35 nucleotides
- Bulged bases
- 8EV6|1|1A|G|555, 8EV6|1|1A|C|2043
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EV6|1|1A|A|8
8EV6|1|1A|U|9
8EV6|1|1A|G|10
8EV6|1|1A|G|11
8EV6|1|1A|U|12
8EV6|1|1A|A|13
8EV6|1|1A|A|14
8EV6|1|1A|G|15
*
8EV6|1|1A|U|550
8EV6|1|1A|A|551
8EV6|1|1A|C|552
8EV6|1|1A|A|553
8EV6|1|1A|A|554
8EV6|1|1A|G|555
8EV6|1|1A|C|556
*
8EV6|1|1A|G|2040
8EV6|1|1A|A|2041
8EV6|1|1A|A|2042
8EV6|1|1A|C|2043
8EV6|1|1A|U|2044
8EV6|1|1A|G|2045
*
8EV6|1|1A|C|2062
8EV6|1|1A|U|2063
8EV6|1|1A|A|2064
8EV6|1|1A|C|2065
*
8EV6|1|1A|G|2637
8EV6|1|1A|C|2638
8EV6|1|1A|G|2639
8EV6|1|1A|C|2640
8EV6|1|1A|A|2641
8EV6|1|1A|G|2642
*
8EV6|1|1A|C|2801
8EV6|1|1A|C|2802
*
8EV6|1|1A|G|2903
8EV6|1|1A|U|2904
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
Coloring options: