J7_8EV6_003

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8EV6|1|2A|A|945, 8EV6|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EV6|1|2A|C|817
8EV6|1|2A|G|818
8EV6|1|2A|A|819
8EV6|1|2A|A|820
8EV6|1|2A|A|821
8EV6|1|2A|U|822
*
8EV6|1|2A|A|835
8EV6|1|2A|G|836
*
8EV6|1|2A|U|943
8EV6|1|2A|G|944
8EV6|1|2A|A|945
8EV6|1|2A|G|946
*
8EV6|1|2A|C|971
8EV6|1|2A|G|972
8EV6|1|2A|A|973
8EV6|1|2A|G|974
8EV6|1|2A|C|975
8EV6|1|2A|G|975|||A
8EV6|1|2A|C|976
*
8EV6|1|2A|G|987
8EV6|1|2A|A|988
8EV6|1|2A|G|989
8EV6|1|2A|A|990
8EV6|1|2A|C|991
*
8EV6|1|2A|G|1163
8EV6|1|2A|G|1164
*
8EV6|1|2A|C|1185
8EV6|1|2A|G|1186
8EV6|1|2A|G|1187
8EV6|1|2A|U|1188
8EV6|1|2A|A|1189
8EV6|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21