J7_8FC1_004

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8FC1|1|2A|A|945, 8FC1|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC1|1|2A|C|817
8FC1|1|2A|G|818
8FC1|1|2A|A|819
8FC1|1|2A|A|820
8FC1|1|2A|A|821
8FC1|1|2A|U|822
*
8FC1|1|2A|A|835
8FC1|1|2A|G|836
*
8FC1|1|2A|U|943
8FC1|1|2A|G|944
8FC1|1|2A|A|945
8FC1|1|2A|G|946
*
8FC1|1|2A|C|971
8FC1|1|2A|G|972
8FC1|1|2A|A|973
8FC1|1|2A|G|974
8FC1|1|2A|C|975
8FC1|1|2A|G|975|||A
8FC1|1|2A|C|976
*
8FC1|1|2A|G|987
8FC1|1|2A|A|988
8FC1|1|2A|G|989
8FC1|1|2A|A|990
8FC1|1|2A|C|991
*
8FC1|1|2A|G|1163
8FC1|1|2A|G|1164
*
8FC1|1|2A|C|1185
8FC1|1|2A|G|1186
8FC1|1|2A|G|1187
8FC1|1|2A|U|1188
8FC1|1|2A|A|1189
8FC1|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21