3D structure

PDB id
8FC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length
35 nucleotides
Bulged bases
8FC3|1|2A|G|530, 8FC3|1|2A|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FC3|1|2A|A|8
8FC3|1|2A|U|9
8FC3|1|2A|G|10
8FC3|1|2A|G|11
8FC3|1|2A|U|12
8FC3|1|2A|A|13
8FC3|1|2A|A|14
8FC3|1|2A|G|15
*
8FC3|1|2A|U|525
8FC3|1|2A|A|526
8FC3|1|2A|C|527
8FC3|1|2A|A|528
8FC3|1|2A|A|529
8FC3|1|2A|G|530
8FC3|1|2A|C|531
*
8FC3|1|2A|G|2018
8FC3|1|2A|A|2019
8FC3|1|2A|A|2020
8FC3|1|2A|C|2021
8FC3|1|2A|U|2022
8FC3|1|2A|G|2023
*
8FC3|1|2A|C|2040
8FC3|1|2A|U|2041
8FC3|1|2A|A|2042
8FC3|1|2A|C|2043
*
8FC3|1|2A|G|2625
8FC3|1|2A|C|2626
8FC3|1|2A|G|2627
8FC3|1|2A|C|2628
8FC3|1|2A|A|2629
8FC3|1|2A|G|2630
*
8FC3|1|2A|C|2788
8FC3|1|2A|C|2789
*
8FC3|1|2A|G|2894
8FC3|1|2A|U|2895

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L32
Chain 2E
50S ribosomal protein L3
Chain 2N
50S ribosomal protein L13
Chain 2U
50S ribosomal protein L20
Chain 2W
50S ribosomal protein L22

Coloring options:

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