J7_8FC4_002

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

8FC4|1|2A|G|530, 8FC4|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC4|1|2A|A|8
8FC4|1|2A|U|9
8FC4|1|2A|G|10
8FC4|1|2A|G|11
8FC4|1|2A|U|12
8FC4|1|2A|A|13
8FC4|1|2A|A|14
8FC4|1|2A|G|15
*
8FC4|1|2A|U|525
8FC4|1|2A|A|526
8FC4|1|2A|C|527
8FC4|1|2A|A|528
8FC4|1|2A|A|529
8FC4|1|2A|G|530
8FC4|1|2A|C|531
*
8FC4|1|2A|G|2018
8FC4|1|2A|A|2019
8FC4|1|2A|A|2020
8FC4|1|2A|C|2021
8FC4|1|2A|U|2022
8FC4|1|2A|G|2023
*
8FC4|1|2A|C|2040
8FC4|1|2A|U|2041
8FC4|1|2A|A|2042
8FC4|1|2A|C|2043
*
8FC4|1|2A|G|2625
8FC4|1|2A|C|2626
8FC4|1|2A|G|2627
8FC4|1|2A|C|2628
8FC4|1|2A|A|2629
8FC4|1|2A|G|2630
*
8FC4|1|2A|C|2788
8FC4|1|2A|C|2789
*
8FC4|1|2A|G|2894
8FC4|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22