J7_8FC6_001
3D structure
- PDB id
- 8FC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.35 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
- Length
- 35 nucleotides
- Bulged bases
- 8FC6|1|1A|G|530, 8FC6|1|1A|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FC6|1|1A|A|8
8FC6|1|1A|U|9
8FC6|1|1A|G|10
8FC6|1|1A|G|11
8FC6|1|1A|U|12
8FC6|1|1A|A|13
8FC6|1|1A|A|14
8FC6|1|1A|G|15
*
8FC6|1|1A|U|525
8FC6|1|1A|A|526
8FC6|1|1A|C|527
8FC6|1|1A|A|528
8FC6|1|1A|A|529
8FC6|1|1A|G|530
8FC6|1|1A|C|531
*
8FC6|1|1A|G|2018
8FC6|1|1A|A|2019
8FC6|1|1A|A|2020
8FC6|1|1A|C|2021
8FC6|1|1A|U|2022
8FC6|1|1A|G|2023
*
8FC6|1|1A|C|2040
8FC6|1|1A|U|2041
8FC6|1|1A|A|2042
8FC6|1|1A|C|2043
*
8FC6|1|1A|G|2625
8FC6|1|1A|C|2626
8FC6|1|1A|G|2627
8FC6|1|1A|C|2628
8FC6|1|1A|A|2629
8FC6|1|1A|G|2630
*
8FC6|1|1A|C|2788
8FC6|1|1A|C|2789
*
8FC6|1|1A|G|2894
8FC6|1|1A|U|2895
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
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