J7_8FC6_004

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8FC6|1|2A|A|945, 8FC6|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC6|1|2A|C|817
8FC6|1|2A|G|818
8FC6|1|2A|A|819
8FC6|1|2A|A|820
8FC6|1|2A|A|821
8FC6|1|2A|U|822
*
8FC6|1|2A|A|835
8FC6|1|2A|G|836
*
8FC6|1|2A|U|943
8FC6|1|2A|G|944
8FC6|1|2A|A|945
8FC6|1|2A|G|946
*
8FC6|1|2A|C|971
8FC6|1|2A|G|972
8FC6|1|2A|A|973
8FC6|1|2A|G|974
8FC6|1|2A|C|975
8FC6|1|2A|G|975|||A
8FC6|1|2A|C|976
*
8FC6|1|2A|G|987
8FC6|1|2A|A|988
8FC6|1|2A|G|989
8FC6|1|2A|A|990
8FC6|1|2A|C|991
*
8FC6|1|2A|G|1163
8FC6|1|2A|G|1164
*
8FC6|1|2A|C|1185
8FC6|1|2A|G|1186
8FC6|1|2A|G|1187
8FC6|1|2A|U|1188
8FC6|1|2A|A|1189
8FC6|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21