J7_8FL4_001

3D structure

PDB id

8FL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAAGUUU*A(PSU)AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

35 nucleotides

Bulged bases

8FL4|1|L3|U|1671

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL4|1|L3|C|1666
8FL4|1|L3|G|1667
8FL4|1|L3|A|1668
8FL4|1|L3|A|1669
8FL4|1|L3|G|1670
8FL4|1|L3|U|1671
8FL4|1|L3|U|1672
8FL4|1|L3|U|1673
*
8FL4|1|L3|A|1682
8FL4|1|L3|PSU|1683
8FL4|1|L3|A|1684
8FL4|1|L3|G|1685
*
8FL4|1|L3|U|1852
8FL4|1|L3|G|1853
8FL4|1|L3|G|1854
8FL4|1|L3|G|1855
*
8FL4|1|L3|C|1879
8FL4|1|L3|G|1880
8FL4|1|L3|C|1881
8FL4|1|L3|U|1882
8FL4|1|L3|G|1883
8FL4|1|L3|C|1884
*
8FL4|1|L3|G|1895
8FL4|1|L3|A|1896
8FL4|1|L3|A|1897
8FL4|1|L3|C|1898
8FL4|1|L3|G|1899
*
8FL4|1|L3|C|2077
8FL4|1|L3|C|2078
*
8FL4|1|L3|G|2278
8FL4|1|L3|A|2279
8FL4|1|L3|G|2280
8FL4|1|L3|U|2281
8FL4|1|L3|A|2282
8FL4|1|L3|G|2283

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L4

5S ribosomal RNA; 5S rRNA

Chain LB

60S ribosomal protein L18

Chain LE

60S ribosomal protein L21

Chain LK

60S ribosomal protein L27a

Chain LQ

60S ribosomal protein L32

Chain LT

60S ribosomal protein L35a

Chain SA

60S ribosomal protein L4

Chain SD

60S ribosomal protein L7