3D structure

PDB id
8FLE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State L2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.48 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
8FLE|1|L3|U|1882
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FLE|1|L3|C|1666
8FLE|1|L3|G|1667
8FLE|1|L3|A|1668
8FLE|1|L3|A|1669
8FLE|1|L3|G|1670
8FLE|1|L3|U|1671
*
8FLE|1|L3|A|1684
8FLE|1|L3|G|1685
*
8FLE|1|L3|U|1852
8FLE|1|L3|G|1853
8FLE|1|L3|G|1854
8FLE|1|L3|G|1855
*
8FLE|1|L3|C|1879
8FLE|1|L3|G|1880
8FLE|1|L3|C|1881
8FLE|1|L3|U|1882
8FLE|1|L3|G|1883
8FLE|1|L3|C|1884
*
8FLE|1|L3|G|1895
8FLE|1|L3|A|1896
8FLE|1|L3|A|1897
8FLE|1|L3|C|1898
8FLE|1|L3|G|1899
*
8FLE|1|L3|C|2077
8FLE|1|L3|C|2078
*
8FLE|1|L3|G|2278
8FLE|1|L3|A|2279
8FLE|1|L3|G|2280
8FLE|1|L3|U|2281
8FLE|1|L3|A|2282
8FLE|1|L3|G|2283

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L4
5S ribosomal RNA; 5S rRNA
Chain L6
60S ribosomal protein L13
Chain LB
60S ribosomal protein L18
Chain LE
60S ribosomal protein L21
Chain LK
60S ribosomal protein L27a
Chain LM
60S ribosomal protein L29
Chain LQ
60S ribosomal protein L32
Chain LT
60S ribosomal protein L35a
Chain SA
60S ribosomal protein L4
Chain SD
60S ribosomal protein L7

Coloring options:

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