3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
8FZF|1|A|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FZF|1|A|C|8
8FZF|1|A|G|9
8FZF|1|A|A|10
8FZF|1|A|C|11
8FZF|1|A|U|12
8FZF|1|A|A|13
8FZF|1|A|A|14
8FZF|1|A|G|15
*
8FZF|1|A|U|525
8FZF|1|A|A|526
8FZF|1|A|C|527
8FZF|1|A|A|528
8FZF|1|A|A|529
8FZF|1|A|G|530
8FZF|1|A|C|531
*
8FZF|1|A|G|2018
8FZF|1|A|A|2019
8FZF|1|A|A|2020
8FZF|1|A|C|2021
8FZF|1|A|U|2022
8FZF|1|A|C|2023
*
8FZF|1|A|G|2040
8FZF|1|A|U|2041
8FZF|1|A|A|2042
8FZF|1|A|C|2043
*
8FZF|1|A|G|2625
8FZF|1|A|C|2626
8FZF|1|A|G|2627
8FZF|1|A|C|2628
8FZF|1|A|U|2629
8FZF|1|A|G|2630
*
8FZF|1|A|C|2788
8FZF|1|A|C|2789
*
8FZF|1|A|G|2894
8FZF|1|A|G|2895

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain L
50S ribosomal protein L13
Chain S
50S ribosomal protein L20
Chain U
50S ribosomal protein L22

Coloring options:

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