J7_8G29_003

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8G29|1|2A|A|945, 8G29|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G29|1|2A|C|817
8G29|1|2A|G|818
8G29|1|2A|A|819
8G29|1|2A|A|820
8G29|1|2A|A|821
8G29|1|2A|U|822
*
8G29|1|2A|A|835
8G29|1|2A|G|836
*
8G29|1|2A|U|943
8G29|1|2A|G|944
8G29|1|2A|A|945
8G29|1|2A|G|946
*
8G29|1|2A|C|971
8G29|1|2A|G|972
8G29|1|2A|A|973
8G29|1|2A|G|974
8G29|1|2A|C|975
8G29|1|2A|G|975|||A
8G29|1|2A|C|976
*
8G29|1|2A|G|987
8G29|1|2A|A|988
8G29|1|2A|G|989
8G29|1|2A|A|990
8G29|1|2A|C|991
*
8G29|1|2A|G|1163
8G29|1|2A|G|1164
*
8G29|1|2A|C|1185
8G29|1|2A|G|1186
8G29|1|2A|G|1187
8G29|1|2A|U|1188
8G29|1|2A|A|1189
8G29|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21