J7_8G2A_001

3D structure

PDB id

8G2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8G2A|1|1A|A|945, 8G2A|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2A|1|1A|C|817
8G2A|1|1A|G|818
8G2A|1|1A|A|819
8G2A|1|1A|A|820
8G2A|1|1A|A|821
8G2A|1|1A|U|822
*
8G2A|1|1A|A|835
8G2A|1|1A|G|836
*
8G2A|1|1A|U|943
8G2A|1|1A|G|944
8G2A|1|1A|A|945
8G2A|1|1A|G|946
*
8G2A|1|1A|C|971
8G2A|1|1A|G|972
8G2A|1|1A|A|973
8G2A|1|1A|G|974
8G2A|1|1A|C|975
8G2A|1|1A|G|975|||A
8G2A|1|1A|C|976
*
8G2A|1|1A|G|987
8G2A|1|1A|A|988
8G2A|1|1A|G|989
8G2A|1|1A|A|990
8G2A|1|1A|C|991
*
8G2A|1|1A|G|1163
8G2A|1|1A|G|1164
*
8G2A|1|1A|C|1185
8G2A|1|1A|G|1186
8G2A|1|1A|G|1187
8G2A|1|1A|U|1188
8G2A|1|1A|A|1189
8G2A|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21