3D structure

PDB id
8G38 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8G38|1|B|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8G38|1|B|C|817
8G38|1|B|G|818
8G38|1|B|A|819
8G38|1|B|A|820
8G38|1|B|A|821
8G38|1|B|G|822
*
8G38|1|B|C|835
8G38|1|B|G|836
8G38|1|B|C|837
8G38|1|B|C|838
*
8G38|1|B|G|940
8G38|1|B|A|941
8G38|1|B|G|942
8G38|1|B|A|943
8G38|1|B|C|944
8G38|1|B|A|945
8G38|1|B|C|946
*
8G38|1|B|G|971
8G38|1|B|A|972
8G38|1|B|A|973
8G38|1|B|G|974
8G38|1|B|A|975
8G38|1|B|G|976
*
8G38|1|B|C|987
8G38|1|B|A|988
8G38|1|B|G|989
8G38|1|B|A|990
8G38|1|B|C|991
*
8G38|1|B|G|1163
8G38|1|B|C|1164
*
8G38|1|B|G|1185
8G38|1|B|G|1186
8G38|1|B|G|1187
8G38|1|B|U|1188
8G38|1|B|A|1189
8G38|1|B|G|1190

Current chains

Chain B
23S

Nearby chains

Chain 3
50S ribosomal protein L35
Chain A
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
Ribosomal protein L21
Chain Z
50S ribosomal protein L30

Coloring options:

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