3D structure

PDB id
8G6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.31 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8G6X|1|a|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8G6X|1|a|C|817
8G6X|1|a|G|818
8G6X|1|a|A|819
8G6X|1|a|A|820
8G6X|1|a|A|821
8G6X|1|a|G|822
*
8G6X|1|a|C|835
8G6X|1|a|G|836
8G6X|1|a|C|837
8G6X|1|a|C|838
*
8G6X|1|a|G|940
8G6X|1|a|A|941
8G6X|1|a|G|942
8G6X|1|a|A|943
8G6X|1|a|C|944
8G6X|1|a|A|945
8G6X|1|a|C|946
*
8G6X|1|a|G|971
8G6X|1|a|A|972
8G6X|1|a|A|973
8G6X|1|a|G|974
8G6X|1|a|A|975
8G6X|1|a|G|976
*
8G6X|1|a|C|987
8G6X|1|a|A|988
8G6X|1|a|G|989
8G6X|1|a|A|990
8G6X|1|a|C|991
*
8G6X|1|a|G|1163
8G6X|1|a|C|1164
*
8G6X|1|a|G|1185
8G6X|1|a|G|1186
8G6X|1|a|G|1187
8G6X|1|a|U|1188
8G6X|1|a|A|1189
8G6X|1|a|G|1190

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain b
5S ribosomal RNA; 5S rRNA
Chain k
50S ribosomal protein L15
Chain p
50S ribosomal protein L20
Chain q
Ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:

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