J7_8G6Y_001

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8G6Y|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G6Y|1|a|C|8
8G6Y|1|a|G|9
8G6Y|1|a|A|10
8G6Y|1|a|C|11
8G6Y|1|a|U|12
8G6Y|1|a|A|13
8G6Y|1|a|A|14
8G6Y|1|a|G|15
*
8G6Y|1|a|U|525
8G6Y|1|a|A|526
8G6Y|1|a|C|527
8G6Y|1|a|A|528
8G6Y|1|a|A|529
8G6Y|1|a|G|530
8G6Y|1|a|C|531
*
8G6Y|1|a|G|2018
8G6Y|1|a|A|2019
8G6Y|1|a|A|2020
8G6Y|1|a|C|2021
8G6Y|1|a|U|2022
8G6Y|1|a|C|2023
*
8G6Y|1|a|G|2040
8G6Y|1|a|U|2041
8G6Y|1|a|A|2042
8G6Y|1|a|C|2043
*
8G6Y|1|a|G|2625
8G6Y|1|a|C|2626
8G6Y|1|a|G|2627
8G6Y|1|a|C|2628
8G6Y|1|a|U|2629
8G6Y|1|a|G|2630
*
8G6Y|1|a|C|2788
8G6Y|1|a|C|2789
*
8G6Y|1|a|G|2894
8G6Y|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32