J7_8HSP_002

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8HSP|1|a|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HSP|1|a|C|817
8HSP|1|a|G|818
8HSP|1|a|A|819
8HSP|1|a|A|820
8HSP|1|a|A|821
8HSP|1|a|G|822
*
8HSP|1|a|C|835
8HSP|1|a|G|836
8HSP|1|a|C|837
8HSP|1|a|C|838
*
8HSP|1|a|G|940
8HSP|1|a|A|941
8HSP|1|a|G|942
8HSP|1|a|A|943
8HSP|1|a|C|944
8HSP|1|a|A|945
8HSP|1|a|C|946
*
8HSP|1|a|G|971
8HSP|1|a|A|972
8HSP|1|a|A|973
8HSP|1|a|G|974
8HSP|1|a|A|975
8HSP|1|a|G|976
*
8HSP|1|a|C|987
8HSP|1|a|A|988
8HSP|1|a|G|989
8HSP|1|a|A|990
8HSP|1|a|C|991
*
8HSP|1|a|G|1163
8HSP|1|a|C|1164
*
8HSP|1|a|G|1185
8HSP|1|a|G|1186
8HSP|1|a|G|1187
8HSP|1|a|U|1188
8HSP|1|a|A|1189
8HSP|1|a|G|1190

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain b

5S ribosomal RNA; 5S rRNA

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21

Chain y

50S ribosomal protein L30