3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8HTZ|1|a|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8HTZ|1|a|C|817
8HTZ|1|a|G|818
8HTZ|1|a|A|819
8HTZ|1|a|A|820
8HTZ|1|a|A|821
8HTZ|1|a|G|822
*
8HTZ|1|a|C|835
8HTZ|1|a|G|836
8HTZ|1|a|C|837
8HTZ|1|a|C|838
*
8HTZ|1|a|G|940
8HTZ|1|a|A|941
8HTZ|1|a|G|942
8HTZ|1|a|A|943
8HTZ|1|a|C|944
8HTZ|1|a|A|945
8HTZ|1|a|C|946
*
8HTZ|1|a|G|971
8HTZ|1|a|A|972
8HTZ|1|a|A|973
8HTZ|1|a|G|974
8HTZ|1|a|A|975
8HTZ|1|a|G|976
*
8HTZ|1|a|C|987
8HTZ|1|a|A|988
8HTZ|1|a|G|989
8HTZ|1|a|A|990
8HTZ|1|a|C|991
*
8HTZ|1|a|G|1163
8HTZ|1|a|C|1164
*
8HTZ|1|a|G|1185
8HTZ|1|a|G|1186
8HTZ|1|a|G|1187
8HTZ|1|a|U|1188
8HTZ|1|a|A|1189
8HTZ|1|a|G|1190

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain b
5S ribosomal RNA; 5S rRNA
Chain k
50S ribosomal protein L15
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:

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