J7_8I9Z_001
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9Z|1|C1|C|930
8I9Z|1|C1|G|931
8I9Z|1|C1|A|932
8I9Z|1|C1|A|933
8I9Z|1|C1|G|934
8I9Z|1|C1|U|935
*
8I9Z|1|C1|A|948
8I9Z|1|C1|G|949
*
8I9Z|1|C1|U|1096
8I9Z|1|C1|G|1097
8I9Z|1|C1|G|1098
8I9Z|1|C1|G|1099
*
8I9Z|1|C1|C|1123
8I9Z|1|C1|G|1124
8I9Z|1|C1|A|1125
8I9Z|1|C1|U|1126
8I9Z|1|C1|G|1127
8I9Z|1|C1|C|1128
*
8I9Z|1|C1|G|1139
8I9Z|1|C1|A|1140
8I9Z|1|C1|A|1141
8I9Z|1|C1|C|1142
8I9Z|1|C1|G|1143
*
8I9Z|1|C1|C|1320
8I9Z|1|C1|C|1321
*
8I9Z|1|C1|G|1347
8I9Z|1|C1|A|1348
8I9Z|1|C1|G|1349
8I9Z|1|C1|U|1350
8I9Z|1|C1|A|1351
8I9Z|1|C1|G|1352
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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