J7_8IE3_001

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGU*AG*UGGGCC*GGCGCU(OMG)C*GAACG*CC*GAGUAG

Length

35 nucleotides

Bulged bases

8IE3|1|2|G|1854

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IE3|1|2|C|1666
8IE3|1|2|G|1667
8IE3|1|2|A|1668
8IE3|1|2|A|1669
8IE3|1|2|G|1670
8IE3|1|2|U|1671
*
8IE3|1|2|A|1684
8IE3|1|2|G|1685
*
8IE3|1|2|U|1852
8IE3|1|2|G|1853
8IE3|1|2|G|1854
8IE3|1|2|G|1855
8IE3|1|2|C|1856
8IE3|1|2|C|1857
*
8IE3|1|2|G|1877
8IE3|1|2|G|1878
8IE3|1|2|C|1879
8IE3|1|2|G|1880
8IE3|1|2|C|1881
8IE3|1|2|U|1882
8IE3|1|2|OMG|1883
8IE3|1|2|C|1884
*
8IE3|1|2|G|1895
8IE3|1|2|A|1896
8IE3|1|2|A|1897
8IE3|1|2|C|1898
8IE3|1|2|G|1899
*
8IE3|1|2|C|2077
8IE3|1|2|C|2078
*
8IE3|1|2|G|2278
8IE3|1|2|A|2279
8IE3|1|2|G|2280
8IE3|1|2|U|2281
8IE3|1|2|A|2282
8IE3|1|2|G|2283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a

Chain p

60S ribosomal protein L7