J7_8IFB_001

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8IFB|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFB|1|a|C|8
8IFB|1|a|G|9
8IFB|1|a|A|10
8IFB|1|a|C|11
8IFB|1|a|U|12
8IFB|1|a|A|13
8IFB|1|a|A|14
8IFB|1|a|G|15
*
8IFB|1|a|U|525
8IFB|1|a|A|526
8IFB|1|a|C|527
8IFB|1|a|A|528
8IFB|1|a|A|529
8IFB|1|a|G|530
8IFB|1|a|C|531
*
8IFB|1|a|G|2018
8IFB|1|a|A|2019
8IFB|1|a|A|2020
8IFB|1|a|C|2021
8IFB|1|a|U|2022
8IFB|1|a|C|2023
*
8IFB|1|a|G|2040
8IFB|1|a|U|2041
8IFB|1|a|A|2042
8IFB|1|a|C|2043
*
8IFB|1|a|G|2625
8IFB|1|a|C|2626
8IFB|1|a|G|2627
8IFB|1|a|C|2628
8IFB|1|a|U|2629
8IFB|1|a|G|2630
*
8IFB|1|a|C|2788
8IFB|1|a|C|2789
*
8IFB|1|a|G|2894
8IFB|1|a|G|2895

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32