J7_8IFB_002
3D structure
- PDB id
- 8IFB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 8IFB|1|a|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFB|1|a|C|817
8IFB|1|a|G|818
8IFB|1|a|A|819
8IFB|1|a|A|820
8IFB|1|a|A|821
8IFB|1|a|G|822
*
8IFB|1|a|C|835
8IFB|1|a|G|836
8IFB|1|a|C|837
8IFB|1|a|C|838
*
8IFB|1|a|G|940
8IFB|1|a|A|941
8IFB|1|a|G|942
8IFB|1|a|A|943
8IFB|1|a|C|944
8IFB|1|a|A|945
8IFB|1|a|C|946
*
8IFB|1|a|G|971
8IFB|1|a|A|972
8IFB|1|a|A|973
8IFB|1|a|G|974
8IFB|1|a|A|975
8IFB|1|a|G|976
*
8IFB|1|a|C|987
8IFB|1|a|A|988
8IFB|1|a|G|989
8IFB|1|a|A|990
8IFB|1|a|C|991
*
8IFB|1|a|G|1163
8IFB|1|a|C|1164
*
8IFB|1|a|G|1185
8IFB|1|a|G|1186
8IFB|1|a|G|1187
8IFB|1|a|U|1188
8IFB|1|a|A|1189
8IFB|1|a|G|1190
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain k
- 50S ribosomal protein L15
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
- Chain y
- 50S ribosomal protein L30
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