J7_8IFC_001

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8IFC|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFC|1|a|C|8
8IFC|1|a|G|9
8IFC|1|a|A|10
8IFC|1|a|C|11
8IFC|1|a|U|12
8IFC|1|a|A|13
8IFC|1|a|A|14
8IFC|1|a|G|15
*
8IFC|1|a|U|525
8IFC|1|a|A|526
8IFC|1|a|C|527
8IFC|1|a|A|528
8IFC|1|a|A|529
8IFC|1|a|G|530
8IFC|1|a|C|531
*
8IFC|1|a|G|2018
8IFC|1|a|A|2019
8IFC|1|a|A|2020
8IFC|1|a|C|2021
8IFC|1|a|U|2022
8IFC|1|a|C|2023
*
8IFC|1|a|G|2040
8IFC|1|a|U|2041
8IFC|1|a|A|2042
8IFC|1|a|C|2043
*
8IFC|1|a|G|2625
8IFC|1|a|C|2626
8IFC|1|a|G|2627
8IFC|1|a|C|2628
8IFC|1|a|U|2629
8IFC|1|a|G|2630
*
8IFC|1|a|C|2788
8IFC|1|a|C|2789
*
8IFC|1|a|G|2894
8IFC|1|a|G|2895

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32