J7_8IFD_001

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8IFD|1|1A|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|C|1666
8IFD|1|1A|G|1667
8IFD|1|1A|A|1668
8IFD|1|1A|A|1669
8IFD|1|1A|G|1670
8IFD|1|1A|U|1671
*
8IFD|1|1A|A|1684
8IFD|1|1A|G|1685
*
8IFD|1|1A|U|1852
8IFD|1|1A|G|1853
8IFD|1|1A|G|1854
8IFD|1|1A|G|1855
*
8IFD|1|1A|C|1879
8IFD|1|1A|G|1880
8IFD|1|1A|C|1881
8IFD|1|1A|U|1882
8IFD|1|1A|G|1883
8IFD|1|1A|C|1884
*
8IFD|1|1A|G|1895
8IFD|1|1A|A|1896
8IFD|1|1A|A|1897
8IFD|1|1A|C|1898
8IFD|1|1A|G|1899
*
8IFD|1|1A|C|2077
8IFD|1|1A|C|2078
*
8IFD|1|1A|G|2278
8IFD|1|1A|A|2279
8IFD|1|1A|G|2280
8IFD|1|1A|U|2281
8IFD|1|1A|A|2282
8IFD|1|1A|G|2283

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1F

60S ribosomal protein L4

Chain 2A

60S ribosomal protein L7

Chain 2F

60S ribosomal protein L13

Chain 2K

60S ribosomal protein L18

Chain 2N

60S ribosomal protein L21

Chain 2U

60S ribosomal protein L27a

Chain 2V

60S ribosomal protein L29

Chain 2Y

60S ribosomal protein L32

Chain 2Z

60S ribosomal protein L35a