J7_8INK_001

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCU(OMG)C*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8INK|1|2|G|1854

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|C|1666
8INK|1|2|G|1667
8INK|1|2|A|1668
8INK|1|2|A|1669
8INK|1|2|G|1670
8INK|1|2|U|1671
*
8INK|1|2|A|1684
8INK|1|2|G|1685
*
8INK|1|2|U|1852
8INK|1|2|G|1853
8INK|1|2|G|1854
8INK|1|2|G|1855
*
8INK|1|2|C|1879
8INK|1|2|G|1880
8INK|1|2|C|1881
8INK|1|2|U|1882
8INK|1|2|OMG|1883
8INK|1|2|C|1884
*
8INK|1|2|G|1895
8INK|1|2|A|1896
8INK|1|2|A|1897
8INK|1|2|C|1898
8INK|1|2|G|1899
*
8INK|1|2|C|2077
8INK|1|2|C|2078
*
8INK|1|2|G|2278
8INK|1|2|A|2279
8INK|1|2|G|2280
8INK|1|2|U|2281
8INK|1|2|A|2282
8INK|1|2|G|2283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain T

60S ribosomal protein L21

Chain Z

60S ribosomal protein L18

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a

Chain p

60S ribosomal protein L7

Chain w

G Protein Nucleolar 2