J7_8IPY_001
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGCU(OMG)C*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8IPY|1|2|G|1854
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IPY|1|2|C|1666
8IPY|1|2|G|1667
8IPY|1|2|A|1668
8IPY|1|2|A|1669
8IPY|1|2|G|1670
8IPY|1|2|U|1671
*
8IPY|1|2|A|1684
8IPY|1|2|G|1685
*
8IPY|1|2|U|1852
8IPY|1|2|G|1853
8IPY|1|2|G|1854
8IPY|1|2|G|1855
*
8IPY|1|2|C|1879
8IPY|1|2|G|1880
8IPY|1|2|C|1881
8IPY|1|2|U|1882
8IPY|1|2|OMG|1883
8IPY|1|2|C|1884
*
8IPY|1|2|G|1895
8IPY|1|2|A|1896
8IPY|1|2|A|1897
8IPY|1|2|C|1898
8IPY|1|2|G|1899
*
8IPY|1|2|C|2077
8IPY|1|2|C|2078
*
8IPY|1|2|G|2278
8IPY|1|2|A|2279
8IPY|1|2|G|2280
8IPY|1|2|U|2281
8IPY|1|2|A|2282
8IPY|1|2|G|2283
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L27a
- Chain Q
- 60S ribosomal protein L13
- Chain Z
- 60S ribosomal protein L18
- Chain k
- 60S ribosomal protein L32
- Chain n
- 60S ribosomal protein L35a
- Chain p
- 60S ribosomal protein L7
- Chain w
- G Protein Nucleolar 2
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