J7_8IR1_001

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGUUU*AUAG*UGGG*CGCU(OMG)C*GAACG*CC*GAGUAG

Length

35 nucleotides

Bulged bases

8IR1|1|2|G|1854

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|1666
8IR1|1|2|G|1667
8IR1|1|2|A|1668
8IR1|1|2|A|1669
8IR1|1|2|G|1670
8IR1|1|2|U|1671
8IR1|1|2|U|1672
8IR1|1|2|U|1673
*
8IR1|1|2|A|1682
8IR1|1|2|U|1683
8IR1|1|2|A|1684
8IR1|1|2|G|1685
*
8IR1|1|2|U|1852
8IR1|1|2|G|1853
8IR1|1|2|G|1854
8IR1|1|2|G|1855
*
8IR1|1|2|C|1879
8IR1|1|2|G|1880
8IR1|1|2|C|1881
8IR1|1|2|U|1882
8IR1|1|2|OMG|1883
8IR1|1|2|C|1884
*
8IR1|1|2|G|1895
8IR1|1|2|A|1896
8IR1|1|2|A|1897
8IR1|1|2|C|1898
8IR1|1|2|G|1899
*
8IR1|1|2|C|2077
8IR1|1|2|C|2078
*
8IR1|1|2|G|2278
8IR1|1|2|A|2279
8IR1|1|2|G|2280
8IR1|1|2|U|2281
8IR1|1|2|A|2282
8IR1|1|2|G|2283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain R

Ribosome biogenesis regulatory protein homolog

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a

Chain p

60S ribosomal protein L7

Chain w

G Protein Nucleolar 2